Kallisto

Quantify abundances of transcripts from RNA-Seq data

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.

WWW https//pachterlab.github.io/kallisto/about.html