The FreeBSD Ports Archive
FreeBSD biology  : seaview
Multiple DNA/protein sequence alignment editor
SeaView is a multiple sequence alignment editor.
You can align DNA/protein sequences from several organisms, and find
out their relative postions in phylogenic tree.
Once SeaView is installed, you can open the on-line help window through
the 'Help' button to learn how to use SeaView.
Example mase files can be found at:
ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/
http://pbil.univ-lyon1.fr/software/seaview.html
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seaview history
v. 1.37
date: 2007/05/19 20:00:27; author: flz; state: Exp; lines: +1 -1
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
v. 1.36
date: 2006/10/09 08:18:33; author: ale; state: Exp; lines: +2 -1
Chase pdf library and bump PORTREVISION.
v. 1.35
date: 2006/04/05 01:58:03; author: mnag; state: Exp; lines: +1 -1
- Update to 2006.02.13
PR: 95281
Submitted by: maintainer
v. 1.34
date: 2006/02/09 10:33:47; author: lawrance; state: Exp; lines: +6 -7
Update to 2006.01.25.
PR: ports/93051
Submitted by: Fernan Aguero (maintainer)
v. 1.33
date: 2005/12/10 14:04:33; author: tdb; state: Exp; lines: +4 -4
- New upstream version; two patches incorporated.
PR: 90140
Submitted by: Fernan Aguero (maintainer)
Approved by: clement (mentor)
v. 1.32
date: 2005/12/06 15:13:16; author: tdb; state: Exp; lines: +3 -4
- Update to 2005.13.07 to make fetchable again
PR: 89976
Submitted by: Fernan Aguero (maintainer)
Approved by: clement (mentor)
v. 1.31
date: 2005/11/16 04:36:22; author: kris; state: Exp; lines: +2 -0
BROKEN: Size mismatch
v. 1.30
date: 2004/12/18 15:14:42; author: sem; state: Exp; lines: +1 -1
- Update to 2004.12.16
PR: ports/75205
Submitted by: maintainer
v. 1.29
date: 2004/12/11 03:58:19; author: sem; state: Exp; lines: +3 -2
Not a real update with the last patch.
The real update here.
v. 1.28
date: 2004/12/11 03:49:29; author: sem; state: Exp; lines: +1 -1
- This update brings seaview to the latest release (dated 09.24.04
in the FTP site).
- While here add a modeline for vi, and fix a tab (cosmetic)
- Make portlint happy.
PR: ports/74897
Submitted by: maintainer
v. 1.27
date: 2004/05/18 14:59:02; author: eik; state: Exp; lines: +5 -7
unbreak, only minor changes in the distfiles (see PR)
Since the distfile has no version number, put it in
DIST_SUBDIR= ${PORTNAME}-${PORTVERSION}
PR: 66817
Submitted by: Fernan Aguero (new maintainer)
v. 1.26
date: 2004/04/12 03:37:14; author: kris; state: Exp; lines: +2 -0
BROKEN: Checksum mismatch
v. 1.25
date: 2004/01/29 10:09:29; author: krion; state: Exp; lines: +1 -1
- Update to version 2003.11.25
v. 1.24
date: 2003/11/17 13:36:41; author: krion; state: Exp; lines: +8 -13
- Update to new version 2003.11.17
- Unbreak this port
v. 1.23
date: 2003/11/06 23:15:06; author: anholt; state: Exp; lines: +2 -0
Mark BROKEN: distfile has changed.
v. 1.22
date: 2003/05/22 05:59:32; author: hoek; state: Exp; lines: +4 -1
Upgrade to 2003.01.21. Appears to only add some more file export/print
options. Additional patches were necessary since the fltk port seems
to have been upgraded and thus also broken this port (which would
been already broken due to the checksum failure).
v. 1.21
date: 2003/02/20 16:51:35; author: knu; state: Exp; lines: +1 -0
De-pkg-comment.
v. 1.20
date: 2002/11/20 14:03:25; author: ijliao; state: Exp; lines: +5 -5
unbroke by upgrade to 20021018
drop maintainership
PR: 45466
Submitted by: old maintainer
v. 1.19
date: 2002/07/04 09:20:28; author: mikeh; state: Exp; lines: +1 -1
Bump XForms lib. version.
v. 1.18
date: 2002/05/18 02:36:56; author: kris; state: Exp; lines: +3 -1
BROKEN: Checksum is incorrect
v. 1.17
date: 2000/10/08 10:19:17; author: asami; state: Exp; lines: +2 -2
Change PKGDIR from pkg/ to . Also fix places where ${PKGDIR} is
spelled out (many of which are ${PKGDIR}/MESSAGE -> ${PKGMESSAGE} type
fixes that shouldn't have been necessary) and the string "/pkg/"
appear.
v. 1.16
date: 2000/04/08 22:04:54; author: mharo; state: Exp; lines: +7 -7
update with the new PORTNAME/PORTVERSION variables
v. 1.15
date: 1999/08/25 04:48:07; author: obrien; state: Exp; lines: +1 -1
Change Id->FreeBSD.
v. 1.14
date: 1999/06/08 22:14:36; author: steve; state: Exp; lines: +1 -4
The xforms ports is no longer an i386-only port.
v. 1.13
date: 1999/02/03 11:11:40; author: asami; state: Exp; lines: +3 -1
Adjust port Makefiles to new EXTRACT_* variable defaults. See log of
bsd.port.mk rev. 1.304 for details on the change.
The fix here is one of the following.
(1) Define USE_BZIP2 instead of BUILD_DEPENDS on bzip2 and redefining
EXTRACT_* commands.
(2) Change ${EXTRACT_CMD} to ${TAR} when the command is obviously
calling the "tar" command (i.e., arguments like "-xzf" are spelled
out).
(3) If ${EXTRACT_CMD} is called directly with ${EXTRACT_BEFORE_ARGS},
add ${EXTRACT_AFTER_ARGS} to the command line as well.
(4) If any of EXTRACT_CMD, EXTRACT_BEFORE_ARGS or EXTRACT_AFTER_ARGS
is set, define the other two too.
v. 1.12
date: 1999/01/07 08:19:24; author: simokawa; state: Exp; lines: +4 -1
Added 'ONLY_FOR_ARCHS=i386' to XForms dependent ports.
XForms has not been available for FreeBSD/alpha yet.
v. 1.11
date: 1998/11/03 00:51:24; author: jseger; state: Exp; lines: +1 -3
Unbreak for ELF
v. 1.10
date: 1998/10/08 10:08:33; author: jkoshy; state: Exp; lines: +2 -2
Master site changed, update MD5.
PR: 8200
Submitted by: frankch@waru.life.nthu.edu.tw (maintainer)
v. 1.9
date: 1998/09/26 23:18:03; author: steve; state: Exp; lines: +4 -2
Mark broken for ELF because of xforms port.
v. 1.8
date: 1998/08/21 03:09:08; author: jseger; state: Exp; lines: +1 -3
Unbreak by making a new checksum and fixing the makefile to find a new source
file.
v. 1.7
date: 1998/08/20 17:41:16; author: jseger; state: Exp; lines: +3 -1
BROKEN:
# make checksum
>> Checksum mismatch for seaview.tar.
v. 1.6
date: 1998/08/07 23:56:11; author: asami; state: Exp; lines: +2 -2
Fix up dependencies for ports that moved into the x11-toolkits category.
v. 1.5
date: 1998/08/05 09:30:44; author: asami; state: Exp; lines: +2 -2
Rename all USE_X11 to USE_X_PREFIX. Requires 1.279 (3.0-current) or
1.227.2.41 (2.2-stable) of bsd.port.mk for this to be interpreted
correctly.
v. 1.4
date: 1998/07/27 23:24:01; author: asami; state: Exp; lines: +2 -2
Making x11 category more useful project part 1: take out "x11" of
ports that are mere users of X.
Partial list submitted by: Josh Gilliam
v. 1.3
date: 1998/03/30 23:44:07; author: asami; state: Exp; lines: +2 -2
mkdir -> ${MKDIR}. This also has the side-effect of making this
port reinstall-friendly.
v. 1.2
date: 1997/12/26 11:49:39; author: asami; state: Exp; lines: +2 -2
Typo (LIB_DEPEND -> LIB_DEPENDS).
v. 1.1
date: 1997/12/21 22:04:38; author: vanilla; state: Exp;
branches: 1.1.1;
Initial revision
v. 1.1.1.1
date: 1997/12/21 22:04:38; author: vanilla; state: Exp; lines: +0 -0
Seaview is a multiple DNA sequence alignment editor.
It is capable of align DNA sequences from various organisms
and assign their position in the phylogenic tree.
PR: ports/5229
Submitted by: Frank Chen Hsiung Chan
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