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Rubygem-bio-old-biofetch-emulator
Jul 20, 2023
Emulate Bio::Fetch object
bio-old-biofetch-emulator emulates BioFetch object in BioRuby as if discontinued BioRuby BioFetch server were still alive. It overrides methods and objects in BioFetch, and if the old BioRuby BioFetch server’s URL is given, it intercepts all requests and converts them into existing web services such as TogoWS, KEGG REST API, NCBI E-Utilities, and GenomeNetgenome.jp.
Checkout these related ports:
- Wise - Intelligent algorithms for DNA searches
- Wfa2-lib - Exact gap-affine algorithm using homology to accelerate alignment
- Vt - Discovers short variants from Next Generation Sequencing data
- Vsearch - Versatile open-source tool for metagenomics
- Viennarna - Alignment tools for the structural analysis of RNA
- Velvet - Sequence assembler for very short reads
- Vcftools - Tools for working with VCF genomics files
- Vcflib - C++ library and CLI tools for parsing and manipulating VCF files
- Vcf2hap - Generate .hap file from VCF for haplohseq
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- Unikmer - Toolkit for nucleic acid k-mer analysis, set operations on k-mers
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- Ucsc-userapps - Command line tools from the UCSC Genome Browser project
- Trimmomatic - Flexible read trimming tool for Illumina NGS data