FreeBSD.software
Home/biology/ucsc-userapps

ucsc-userapps

474

Command line tools from the UCSC Genome Browser project

These are the command-line bioinformatics utilities associated with the UCSC genome browser. Care has been taken to install only the freely available tools. However, the license information at https://genome.ucsc.edu/license/ is not entirely clear and we may add non-free utilities in the future. Contact UCSC if you are using this port for commercial purposes.

Origin: biology/ucsc-userapps
Category: biology
Size: 100MiB
License: MIT
Maintainer: jwb@FreeBSD.org
Dependencies: 7 packages
Required by: 1 packages
Website: hgdownload.cse.ucsc.edu/admin/exe
$pkg install ucsc-userapps

Dependencies (7)

python311pngperl5mysql80-clientlibunwindfreetype2bash

Required By (1 packages)

biostar-tools

More in biology

htslib1.22
C library for high-throughput sequencing data formats
p5-BioPerl1.007008
Collection of Perl modules for bioinformatics
samtools1.22
Tools for manipulating next-generation sequencing data
biolibc0.2.7
Low-level high-performance bioinformatics library
bcftools1.22
Tools for manipulating next-generation sequencing data
bedtools2.31.1
Toolset for genome set arithmetic such as intersect, union
fastqc0.12.1
Quality control tool for high throughput sequence data
sra-tools3.3.0_2
NCBI's toolkit for handling data in INSDC Sequence Read Archives
bwa0.7.19
Burrows-Wheeler sequence aligner
libsbml5.20.5_1
API Library for Working with SBML File