scrm
1.7.4_1Coalescent simulator for biological sequences
scrm simulates the evolution of genetic sequences. It takes a neutral evolutionary model as input, and generates random sequences that evolved under the model. As coalescent simulator, it traces the ancestry of the sampled sequences backwards in time and is therefore extremely efficient. Compared to other coalescent simulators, it can simulate chromosome-scale sequences without a measureable reduction of genetic linkage between different sites.
Origin: biology/scrm
Category: biology
Size: 208KiB
License: GPLv3
Maintainer: yuri@FreeBSD.org
Dependencies: 0 packages
Required by: 0 packages
Website: scrm.github.io
$
pkg install scrmMore in biology
htslib1.22
C library for high-throughput sequencing data formatsp5-BioPerl1.007008
Collection of Perl modules for bioinformaticssamtools1.22
Tools for manipulating next-generation sequencing databiolibc0.2.7
Low-level high-performance bioinformatics librarybcftools1.22
Tools for manipulating next-generation sequencing databedtools2.31.1
Toolset for genome set arithmetic such as intersect, unionfastqc0.12.1
Quality control tool for high throughput sequence datasra-tools3.3.0_2
NCBI's toolkit for handling data in INSDC Sequence Read Archivesbwa0.7.19
Burrows-Wheeler sequence alignerlibsbml5.20.5_1
API Library for Working with SBML File