py311-pydeseq2

0.5.2_1

Python implementation of the popular DESeq2 R package

PyDESeq2 is a python implementation of the DESeq2 method for differential expression analysis (DEA) with bulk RNA-seq data, originally in R. It aims to facilitate DEA experiments for python users.

Origin: biology/py-pydeseq2

Category: biology

Size: 540KiB

License: MIT

Maintainer: jwb@FreeBSD.org

Dependencies: 9 packages

Required by: 0 packages

Website: github.com/owkin/PyDESeq2

$pkg install py311-pydeseq2

Dependencies (9)

python311 py311-scipy py311-scikit-learn py311-pandas py311-numpy py311-matplotlib py311-formulaic_contrasts py311-formulaic py311-anndata

More in biology

htslib1.22

C library for high-throughput sequencing data formats

p5-BioPerl1.007008

Collection of Perl modules for bioinformatics

samtools1.22

Tools for manipulating next-generation sequencing data

biolibc0.2.7

Low-level high-performance bioinformatics library

bcftools1.22

Tools for manipulating next-generation sequencing data

bedtools2.31.1

Toolset for genome set arithmetic such as intersect, union

fastqc0.12.1

Quality control tool for high throughput sequence data

sra-tools3.3.0_2

NCBI's toolkit for handling data in INSDC Sequence Read Archives

bwa0.7.19

Burrows-Wheeler sequence aligner

libsbml5.20.5_1

API Library for Working with SBML File