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Ncbi-cxx-toolkit
Jul 20, 2023
NCBI C++ Toolkit
NCBI C++ Toolkit provides free, portable, public domain libraries with no restrictions use. It has been written in the National Center for Biotechnology Information in Bethesda, MD.
It is vaguely a successor, or a new generation of biology/ncbi-toolkit.
It contains
- Networking and Interprocess Communication IPC library
- MultiThreading Library
- CGI and Fast-CGI Library, HTML Generation Library
- SQL Database Access Library, C++ wrapper library for BerkeleyDB
- C++ IOSTREAM Adaptor/Wrapper Library
- GZIP and BZ2 C++ Wrapper Library with IOSTREAM adaptors
- ASN.1 and XML Serialization Library with C++ Code Generator Tool datatool
- Date and Time Library
- File System Function Library
- Command-Line Argument, Configuration and Environment Processing Library
- Sequence Alignment Algorithms Library
- BLAST Engine Library
- Biological Sequences Retrieval and Processing Library
- Portable FLTK and OpenGL based GUI and graphic libraries
- XmlWrapp XML parsing and handling, XSLT, XPath
Checkout these related ports:
- Wise - Intelligent algorithms for DNA searches
- Wfa2-lib - Exact gap-affine algorithm using homology to accelerate alignment
- Vt - Discovers short variants from Next Generation Sequencing data
- Vsearch - Versatile open-source tool for metagenomics
- Viennarna - Alignment tools for the structural analysis of RNA
- Velvet - Sequence assembler for very short reads
- Vcftools - Tools for working with VCF genomics files
- Vcflib - C++ library and CLI tools for parsing and manipulating VCF files
- Vcf2hap - Generate .hap file from VCF for haplohseq
- Vcf-split - Split a multi-sample VCF into single-sample VCFs
- Unikmer - Toolkit for nucleic acid k-mer analysis, set operations on k-mers
- Unanimity - Pacific Biosciences consensus library and applications
- Ugene - Integrated bioinformatics toolkit
- Ucsc-userapps - Command line tools from the UCSC Genome Browser project
- Trimmomatic - Flexible read trimming tool for Illumina NGS data