mummer

4.0.1

Modular system for rapid whole genome alignment

MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.

Origin: biology/mummer

Category: biology

Size: 1.89MiB

License: ART10

Maintainer: yuri@FreeBSD.org

Dependencies: 1 packages

Required by: 1 packages

Website: mummer.sourceforge.net

$pkg install mummer

Dependencies (1)

perl5

Required By (1 packages)

gatk

More in biology

htslib1.22

C library for high-throughput sequencing data formats

p5-BioPerl1.007008

Collection of Perl modules for bioinformatics

samtools1.22

Tools for manipulating next-generation sequencing data

biolibc0.2.7

Low-level high-performance bioinformatics library

bcftools1.22

Tools for manipulating next-generation sequencing data

bedtools2.31.1

Toolset for genome set arithmetic such as intersect, union

fastqc0.12.1

Quality control tool for high throughput sequence data

sra-tools3.3.0_2

NCBI's toolkit for handling data in INSDC Sequence Read Archives

bwa0.7.19

Burrows-Wheeler sequence aligner

libsbml5.20.5_1

API Library for Working with SBML File