hhsuite
3.3.0_3Remote protein homology detection suite
SIMD-vectorized implementation of the Viterbi algorithm for profile HMM alignment and introduced various other speed-ups. This accelerated HHsearch by a factor 4 and HHblits by a factor 2 over the previous version 2.0.16. HHblits3 is ~10x faster than PSI-BLAST and ~20x faster than HMMER3. Jobs to perform HHsearch and HHblits searches with many query profile HMMs can be parallelized over cores and over servers in a cluster using OpenMP and message passing interface (MPI).
Origin: biology/hhsuite
Category: biology
Size: 115MiB
License: GPLv3
Maintainer: yuri@FreeBSD.org
Dependencies: 3 packages
Required by: 0 packages
Website: github.com/soedinglab/hh-suite
$
pkg install hhsuiteDependencies (3)
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