bowtie2

2.5.4

Ultrafast, memory-efficient short read aligner

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour.

Origin: biology/bowtie2

Category: biology

Size: 24.2MiB

License: GPLv3+

Maintainer: jwb@FreeBSD.org

Dependencies: 3 packages

Required by: 3 packages

Website: github.com/BenLangmead/bowtie2

$pkg install bowtie2

Dependencies (3)

python311 perl5 bash

Required By (3 packages)

atac-seq biostar-tools chip-seq

More in biology

htslib1.22

C library for high-throughput sequencing data formats

p5-BioPerl1.007008

Collection of Perl modules for bioinformatics

samtools1.22

Tools for manipulating next-generation sequencing data

biolibc0.2.7

Low-level high-performance bioinformatics library

bcftools1.22

Tools for manipulating next-generation sequencing data

bedtools2.31.1

Toolset for genome set arithmetic such as intersect, union

fastqc0.12.1

Quality control tool for high throughput sequence data

sra-tools3.3.0_2

NCBI's toolkit for handling data in INSDC Sequence Read Archives

bwa0.7.19

Burrows-Wheeler sequence aligner

libsbml5.20.5_1

API Library for Working with SBML File