FreeBSD.software
Home/biology/abyss

abyss

2.3.10

Assembly By Short Sequences: parallel, paired-end sequence assembler

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

Origin: biology/abyss
Category: biology
Size: 7.02MiB
License: GPLv3
Maintainer: yuri@FreeBSD.org
Dependencies: 8 packages
Required by: 0 packages
Website: www.bcgsc.ca/resources/software/abyss
$pkg install abyss

Dependencies (8)

sqlite3mpichlibiconvlibffigmpgmakebtllibbash

More in biology

htslib1.22
C library for high-throughput sequencing data formats
p5-BioPerl1.007008
Collection of Perl modules for bioinformatics
samtools1.22
Tools for manipulating next-generation sequencing data
biolibc0.2.7
Low-level high-performance bioinformatics library
bcftools1.22
Tools for manipulating next-generation sequencing data
bedtools2.31.1
Toolset for genome set arithmetic such as intersect, union
fastqc0.12.1
Quality control tool for high throughput sequence data
sra-tools3.3.0_2
NCBI's toolkit for handling data in INSDC Sequence Read Archives
bwa0.7.19
Burrows-Wheeler sequence aligner
libsbml5.20.5_1
API Library for Working with SBML File