The FreeBSD Ports Archive
FreeBSD biology  : pymol
Free and Open-Source molecular modeling system
PyMOL is a molecular graphics system with an embedded Python interpreter
designed for real-time visualization and rapid generation of
high-quality molecular graphics images and animations. It is fully extensible
and available free to everyone via the "Python" license.
PyMOL can be used to create images and animations with unprecedented ease.
It can also perform many other valuable tasks (such as editing PDB files)
to assist you in your research.
http://pymol.sourceforge.net/
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pymol history
v. 1.30
date: 2007/09/02 07:16:04; author: rafan; state: Exp; lines: +2 -2
- Chase x11-toolkits/pmw renamed to x11-toolkits/py-Pmw
PR: 115302
v. 1.29
date: 2007/05/19 20:00:27; author: flz; state: Exp; lines: +1 -0
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
v. 1.28
date: 2007/02/09 00:11:54; author: maho; state: Exp; lines: +2 -2
Update to 0.99rc6.
PR: 108940
Submitted by: CHAO Shin
v. 1.27
date: 2006/09/17 11:51:56; author: maho; state: Exp; lines: +1 -1
Fix build on amd64
Submitted by: kris
v. 1.26
date: 2006/09/17 01:32:58; author: kris; state: Exp; lines: +4 -0
BROKEN on amd64 and ia64: Does not build
v. 1.25
date: 2006/07/01 05:06:21; author: maho; state: Exp; lines: +7 -15
o Update to 0.99rc1
o add data dir to have working port[1]
PR: 95121[1]
Submitted by: Sangwoo Shim [1]
This commit is a result of hacks at the CodeFest Akihabara 2006 hosted by FSIJ.
v. 1.24
date: 2006/05/03 23:26:34; author: edwin; state: Exp; lines: +0 -1
Remove USE_REINPLACE from all categories starting with B
v. 1.23
date: 2006/01/12 12:54:05; author: sem; state: Exp; lines: +2 -1
- Update graphics/libglut to 6.4.1.
- Shared lib version and PORTREVISION bumb for all affected ports.
While I'm here:
- Remove USE_MESA knob where it was (35 ports).
It marked as depricated for 2 years.
PR: ports/90247
Submitted by: Ermal Lu?i
v. 1.22
date: 2005/10/10 09:08:22; author: maho; state: Exp; lines: +1 -1
Update to 0.9.8
v. 1.21
date: 2005/03/26 22:20:19; author: kris; state: Exp; lines: +1 -1
Try to unbreak on amd64 and ia64
Approved by: portmgr (self)
v. 1.20
date: 2005/02/07 08:39:50; author: maho; state: Exp; lines: +5 -1
update to 0.97
v. 1.19
date: 2004/10/24 03:40:23; author: maho; state: Exp; lines: +0 -0
Forced commit
Actually this report was submitted by mharo,
and eik kindly told me how to fix.
PR: 71095
Submitted by: mharo
v. 1.18
date: 2004/10/24 03:37:02; author: maho; state: Exp; lines: +5 -1
Avoid the use of != statements in ports Makefile
PR: 71095
Submitted by: eik
v. 1.17
date: 2004/05/06 19:49:36; author: maho; state: Exp; lines: +1 -1
Make portlint happy by replacing space to tab
PR: 65409
Submitted by: trevor
v. 1.16
date: 2004/03/20 05:20:46; author: maho; state: Exp; lines: +1 -7
Do not hardcord PICFLAG
Submitted by: ru
v. 1.15
date: 2004/03/19 04:20:11; author: maho; state: Exp; lines: +6 -0
Backout previous change of PICFLAG, since
behaviour of -fPIC and -fpic are different.
Here is the comment form obrien:
--
"-fpic" is a [minor?] optimization for machines that can handle it:
-fpic
Generate position-independent code (PIC) suitable for use in a shared
library, if supported for the target machine. Such code accesses all
constant addresses through a global offset table (GOT). The dynamic
loader resolves the GOT entries when the program starts (the dynamic
loader is not part of GCC; it is part of the operating system). If
the GOT size for the linked executable exceeds a machine-specific
maximum size, you get an error message from the linker indicating
that -fpic does not work; in that case, recompile with -fPIC instead.
(These maximums are 16k on the m88k, 8k on the SPARC, and 32k on the
m68k and RS/6000. The 386 has no such limit.)
-fPIC
If supported for the target machine, emit position-independent code,
suitable for dynamic linking and avoiding any limit on the size of
the global offset table. This option makes a difference on the m68k,
m88k, and the SPARC.
Thanks to: obrien
v. 1.14
date: 2004/03/18 23:06:11; author: maho; state: Exp; lines: +0 -6
-fPIC is appropreate on all architectures.
Submitted by: kris
v. 1.13
date: 2004/03/17 10:47:29; author: maho; state: Exp; lines: +12 -4
1) update to 0.9.3
2) honor PREFIX & LOCALBASE
3) SIZEify
4) possible fix for amd64 and ia64
v. 1.12
date: 2004/02/04 05:18:50; author: marcus; state: Exp; lines: +1 -0
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
(Part 2)
v. 1.11
date: 2003/11/07 20:40:50; author: anholt; state: Exp; lines: +1 -1
LIB_DEPENDS on libglut for libglut rather than soon-to-disappear Mesa3.
v. 1.10
date: 2003/08/20 10:40:37; author: perky; state: Exp; lines: +6 -1
Fix build on python2.3
v. 1.9
date: 2003/07/24 07:06:17; author: maho; state: Exp; lines: +1 -1
Update to 0.90
v. 1.8
date: 2003/05/03 03:45:30; author: maho; state: Exp; lines: +1 -2
Updated to 0.8.6.
Submitted by: M. L. Dodson
Pkg-plist by: maho
v. 1.7
date: 2003/03/07 05:56:43; author: ade; state: Exp; lines: +1 -0
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.
E Nomini Patri, E Fili, E Spiritu Sancti.
v. 1.6
date: 2002/11/19 23:01:49; author: maho; state: Exp; lines: +3 -2
1. add a missing dependency on png and unbreak.
2. change e-mail address of maho.
v. 1.5
date: 2002/08/26 05:13:28; author: perky; state: Exp; lines: +5 -1
o Fix examples directory path which is changed in last revision.
Submitted by: Glenn Johnson
v. 1.4
date: 2002/08/25 08:37:53; author: perky; state: Exp; lines: +9 -4
o Fix RUN_DEPENDS path (PMW -> Pmw)
o Fix DISTNAME which was broken by previous commit.
o Install example files
PR: 41977
Submitted by: Glenn Johnson
Approved by: maintainer
v. 1.3
date: 2002/08/22 04:20:19; author: perky; state: Exp; lines: +1 -1
o Remove redundant dependency on py-tkinter.
o Bump PORTREVISION that I've missed on last commit.
Submitted by: Glenn Johnson
v. 1.2
date: 2002/08/22 03:35:32; author: perky; state: Exp; lines: +2 -1
Add a dependecy to x11-toolkits/pmw
PR: 41857
Submitted by: Glenn Johnson
Approved by: maintainer
v. 1.1
date: 2002/08/13 11:53:43; author: perky; state: Exp;
Add pymol 0.82, Free and Open-Source molecular modeling system.
PR: 40694
Submitted by: Nakata Maho
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