The FreeBSD Ports Archive

FreeBSD biology : py-biopython

A collection of Python modules for bioinformatics

 The Biopython Project is an international association of developers who are
providing freely available Python tools for use in areas of computational
molecular biology such as bioinformatics and genomics.

Biopython is a collection of Python packages and modules created by the
Biopython Project, intended to provide the basis for building bioinformatics
applications in the Python language.

Note that the current release is alpha quality, and not yet deemed to be
stable.

This port includes optional support for Biopython-CORBA, a CORBA interface
built to the BioCorba standard (http://biocorba.org/).

Authors: 
 

py-biopython history

v. 1.24
date: 2007/05/31 03:49:14;  author: miwi;  state: Exp;  lines: +3 -3
- Fix typos.

Reported by:    stas@

v. 1.23
date: 2007/05/30 06:57:20;  author: miwi;  state: Exp;  lines: +4 -4
- Update to 1.43

PR:		111817
Submitted by:	"P.BandieraPaiva" 
Approved by:	maintainer

v. 1.22
date: 2006/10/31 13:25:21;  author: miwi;  state: Exp;  lines: +2 -2
- Update to 1.42

PR:		ports/104635
Submitted by:	Thomas Abthorpe 
Approved by:	maintainer

v. 1.21
date: 2005/11/11 01:15:34;  author: mnag;  state: Exp;  lines: +5 -5
Update to 1.41
Take MAINTAINER
Add SHA256

PR:		88792
Submitted by:	Mauricio Herrera Cuadra 

v. 1.20
date: 2004/11/20 08:09:45;  author: linimon;  state: Exp;  lines: +1 -1
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.

v. 1.19
date: 2004/10/27 20:39:17;  author: pav;  state: Exp;  lines: +6 -16
- Update to 1.30

PR:		ports/71400
Submitted by:	Stefan Walter 
Approved by:	maintainer timeout (2 months)

v. 1.18
date: 2004/07/02 08:20:02;  author: kris;  state: Exp;  lines: +2 -0
BROKEN: Does not build

v. 1.17
date: 2004/02/09 21:40:47;  author: des;  state: Exp;  lines: +7 -102
Upgrade to 1.23.

Approved by:	maintainer timeout

v. 1.16
date: 2003/11/20 15:05:56;  author: trevor;  state: Exp;  lines: +1 -1
Define USE_PERL5_BUILD, not erroneous USE_PERL.

Submitted by:	Oliver Eikemeier

v. 1.15
date: 2003/11/20 13:51:33;  author: trevor;  state: Exp;  lines: +1 -0
Define USE_PERL to make Perl available for (mostly deprecated)
"perl -pi -e" construction.

v. 1.14
date: 2003/11/13 14:44:58;  author: trevor;  state: Exp;  lines: +1 -1
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.

v. 1.13
date: 2003/03/07 05:56:43;  author: ade;  state: Exp;  lines: +1 -0
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.

v. 1.12
date: 2002/07/15 11:37:34;  author: tg;  state: Exp;  lines: +2 -2
Use $PYNUMERIC in the dependencies.

v. 1.11
date: 2002/01/22 10:54:02;  author: wjv;  state: Exp;  lines: +6 -3
- Update to version 1.00a4

PR:		33719
Submitted by:	Hye-Shik Chang 

v. 1.10
date: 2001/10/02 08:31:31;  author: wjv;  state: Exp;  lines: +19 -19
- Update the included (optional) Biopython-CORBA pacakge to version 0.3.0
- If CORBA support is included, the default ORB has changed from omniORB to
  ORBit
- PORTREVISION bump

v. 1.9
date: 2001/09/06 12:42:36;  author: wjv;  state: Exp;  lines: +23 -20
- Update to version 1.00.a3
- Use pkg-req to check the installed version of Python

v. 1.8
date: 2001/07/09 09:57:43;  author: wjv;  state: Exp;  lines: +3 -3
Update to version 1.00.a2

v. 1.7
date: 2001/06/29 15:04:06;  author: wjv;  state: Exp;  lines: +2 -2
Use $FILESDIR rather than hard-coded path.

v. 1.6
date: 2001/06/15 13:25:55;  author: wjv;  state: Exp;  lines: +108 -10
Update to 1.00.a1; change MAINTAINER to my new address.
Many changes to port, including addition of CORBA functionality.

PR:		27957
Submitted by:	Johann Visagie 
Reviewed by:	nbm

v. 1.5
date: 2001/05/29 12:50:01;  author: sobomax;  state: Exp;  lines: +2 -2
math/numpy was renamed to math/py-numeric.

PR:		27594
Submitted by:	Chang, Hye-Shik 

v. 1.4
date: 2000/09/11 14:56:36;  author: nbm;  state: Exp;  lines: +9 -8
Update to 0.90.d03

PR:		21202
Submitted by:	Johann Visagie 

v. 1.3
date: 2000/09/08 12:23:53;  author: tg;  state: Exp;  lines: +2 -2
Don't break package building on Satoshi's cluster. Explicitly depend
on python1.5:lang/python15.

v. 1.2
date: 2000/08/05 16:01:27;  author: will;  state: Exp;  lines: +3 -3
Upgrade to 0.90.d02.

PR:		20383
Submitted by:	maintainer

v. 1.1
date: 2000/07/31 12:12:23;  author: nbm;  state: Exp;
Add py-biopython, is a collection of Python packages and modules created
by the Biopython Project, intended to provide the basis for building
bioinformatics applications in the Python language.

PR:		ports/20260
Submitted by:	Johann Visagie 
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