The FreeBSD Ports Archive

FreeBSD biology : phylip

A Phylogeny Inference Package

               PHYLIP - Phylogeny Inference Package (version 3.6)

PHYLIP (the PHYLogeny Inference Package) is a package of programs for
inferring phylogenies (evolutionary trees).  Methods that are
available in the package include parsimony, distance matrix, and
likelihood methods, including bootstrapping and consensus trees. Data
types that can be handled include molecular sequences, gene
frequencies, restriction sites, distance matrices, and 0/1 discrete
characters.

 Joe Felsenstein
 joe@genetics.washington.edu
 Department of Genetics
 University of Washington
 Box 357360
 Seattle, Washington 98195-7360, U.S.A. 

phylip history

v. 1.17
date: 2007/05/19 20:00:26;  author: flz;  state: Exp;  lines: +1 -0
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

v. 1.16
date: 2007/01/27 21:23:52;  author: itetcu;  state: Exp;  lines: +1 -1
Update to 3.66

PR:		ports/108434
Submitted by:	Marcelo Araujo

v. 1.15
date: 2006/12/13 13:20:20;  author: linimon;  state: Exp;  lines: +1 -1
Reset dbader@ece.unm.edu due to timeouts and no response to email.

Hat:		portmgr

v. 1.14
date: 2006/12/02 20:34:11;  author: rafan;  state: Exp;  lines: +1 -1
- Respect X11BASE

Approved by:	maintainer (implicit)

v. 1.13
date: 2006/02/09 01:17:59;  author: lawrance;  state: Exp;  lines: +1 -0
Put PORTEPOCH back.

Reported by:	chkversion

v. 1.12
date: 2006/02/08 14:45:45;  author: lawrance;  state: Exp;  lines: +14 -27
Update to 3.65.

PR:		ports/92182
Submitted by:	"Choe, Cheng-Dae" 
Approved by:	dbader@ece.unm.edu (maintainer, timeout 14 days)

v. 1.11
date: 2005/04/22 12:08:12;  author: arved;  state: Exp;  lines: +1 -0
Bump PORTEPOCH. 3.6 < 3.62

Pointyhat to:	arved

v. 1.10
date: 2005/04/21 13:45:15;  author: arved;  state: Exp;  lines: +1 -1
Upgrade to 3.62

PR:		79234
Submitted by:	David A. Bader 

v. 1.9
date: 2004/12/09 13:33:55;  author: pav;  state: Exp;  lines: +4 -1
- Add some sites I found with Google, as old master site don't have this
  version anymore

Reported by:	pointyhat via krion

v. 1.8
date: 2004/10/11 22:26:34;  author: pav;  state: Exp;  lines: +7 -4
- Update to 3.62
- Install font files

PR:		ports/72212
Submitted by:	Fernan Aguero 
Approved by:	David A. Bader  (maintainer)

v. 1.7
date: 2004/01/31 16:06:24;  author: pav;  state: Exp;  lines: +2 -3
- Update to 3.6.b

PR:		ports/62142
Submitted by:	David A. Bader  (maintainer)

v. 1.6
date: 2003/02/21 11:01:35;  author: knu;  state: Exp;  lines: +1 -0
De-pkg-comment.

v. 1.5
date: 2002/08/13 16:07:44;  author: naddy;  state: Exp;  lines: +7 -2
Update to version 3.6.a3.

PR:		41412
Submitted by:	David A. Bader 

Additional clean-up:
* Respect CC, CFLAGS, X11BASE.
* Use versioned DIST_SUBDIR.

Approved by:	maintainer

v. 1.4
date: 2001/08/22 10:02:27;  author: wjv;  state: Exp;  lines: +12 -14
- Update to version 3.6.a2.1 - since the distribution tarball hadn't been
  renamed between versions, this port failed checksum.
- Apply some whitespace edits and cut pkg-descr down to size to placate
  portlint.

Reported by:	Jason Stajich 
Approved by:	No response from MAINTAINER

v. 1.3
date: 2001/04/11 03:51:34;  author: steve;  state: Exp;  lines: +2 -1
This port require X libraries to build/run.

v. 1.2
date: 2001/04/02 05:10:14;  author: mharo;  state: Exp;  lines: +18 -14
updated port biology/phylip from vers 3.5 to 3.6

PR:		26146
Submitted by:	    "David A. Bader" 

v. 1.1
date: 2000/07/10 03:25:43;  author: steve;  state: Exp;
Adding phylip version 3.5.

This is a FREE package of programs for inferring phylogenies and carrying
out certain related tasks.  At present it contains 30 programs, which carry
out different algorithms on different kinds of data.

PR:		19705
Submitted by:	David A. Bader 
=============================================================================