FreeBSD biology  : p5-bioperl
A collection of Perl modules for bioinformatics
The Bioperl Project is an international association of developers of open
source Perl tools for bioinformatics, genomics and life science research.
Bioperl is a collection of object-oriented Perl modules created by the
Bioperl Project. It forms the basis of a large number of bioinformatics and
genomics applications.
(For an interesting aside on "How Perl saved the Human Genome Project", see
http://bioperl.org/GetStarted/tpj_ls_bio.html)
http://bioperl.org/
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p5-bioperl history
v. 1.16
date: 2007/09/08 00:53:11; author: linimon; state: Exp; lines: +0 -3
Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.
Work done by: gabor
Sponsored by: Google Summer of Code 2007
Hat: portmgr
v. 1.15
date: 2007/05/19 20:00:25; author: flz; state: Exp; lines: +1 -0
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
v. 1.14
date: 2005/12/04 22:11:44; author: edwin; state: Exp; lines: +2 -0
Add conflicst:
CONFLICTS= p5-bioperl-1.[13579]*
Submitted by: Mauricio Herrera Cuadra ,Fernan Aguero
v. 1.13
date: 2004/09/03 17:04:38; author: leeym; state: Exp; lines: +285 -105
- add missing MAN1 and MAN3
- apply DATADIR, EXAMPLESDIR, and DOCSDIR in PLIST
- update the usage of NOPORTDOCS
PR: 71322
Submitted by: leeym
Approved by: Fernan Aguero
v. 1.12
date: 2004/08/12 12:47:57; author: mat; state: Exp; lines: +3 -1
After devel/p5-File-Temp has gained an IGNORE for PERL_LEVEL > 500800, all
these ports were broken because they always depended on it. I've rearranged all
the dependencies to fit the new scheme.
v. 1.11
date: 2004/03/08 03:29:16; author: linimon; state: Exp; lines: +2 -2
Unmark as broken for 4.x; instead, mark as ignore for perl < 5.6.
v. 1.10
date: 2004/02/22 00:06:35; author: kris; state: Exp; lines: +7 -1
BROKEN on 4.x: Configure fails
v. 1.9
date: 2004/01/21 08:34:33; author: linimon; state: Exp; lines: +582 -162
Major update from 0.7.2 to 1.4 by new maintainer. This is almost a complete
rework of the port.
See the page http://news.open-bio.org/archives/cat_bioperl.html for the
changes between 1.2 and 1.4. The older changes are in the CVS tree.
From the new maintainer:
Note that this new port just handles the installation of bioperl and
not of additional extra stuff (bioperl-gui, bioperl-corba-server,
bioperl-corba-client). This is unlike the behaviour of the current
port.
The extra stuff, though still functional, had very little adoption
among users, and does not appear to be currently supported/maintained.
PR: ports/47303 (and subsequent)
Submitted by: Fernan Aguero (new maintainer)
v. 1.8
date: 2003/10/24 12:01:16; author: ijliao; state: Exp; lines: +14 -15
utilize SITE_PERL
PR: 58166
Submitted by: Cheng-Lung Sung
v. 1.7
date: 2003/03/07 05:56:42; author: ade; state: Exp; lines: +1 -0
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.
E Nomini Patri, E Fili, E Spiritu Sancti.
v. 1.6
date: 2002/01/25 11:46:09; author: wjv; state: Exp; lines: +53 -27
- Update to version 0.7.2, somewhat overdue. :-)
v. 1.5
date: 2001/08/13 10:26:44; author: wjv; state: Exp; lines: +7 -1
- Properly list run-time dependencies in RUN_DEPENDS in Makefile.
- Deploy %%PERL_VER%% and %%PERL_ARCH%% pragmas consistently throughout
pkg-plist. (Ouch, that was embarrassing.)
- Bump PORTREVISION due to the above.
- Update my email address and the project's URL in pkg-descr.
v. 1.4
date: 2001/07/04 13:22:10; author: wjv; state: Exp; lines: +8 -2
- Update to version 0.7.1
- Add a build-time message to inform the user of available options.
v. 1.3
date: 2001/06/26 15:09:39; author: wjv; state: Exp; lines: +144 -56
Embarrassingly long overdue update to 0.7.0, including optional support for
GUI (Tk) and CORBA extensions.
v. 1.2
date: 2000/10/13 12:43:24; author: jeh; state: Exp; lines: +60 -101
Update to version 0.6.2
PR: 21954
Submitted by: Johann Visagie MAINTAINER
v. 1.1
date: 2000/07/28 14:06:02; author: nbm; state: Exp;
Add BioPerl, a collection of Perl5 mods for bioinformatics/genomics
PR: ports/20252
Submitted by: Johann Visagie
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