The FreeBSD Ports Archive
FreeBSD biology  : p5-Bio-Phylo
Phylogenetic analysis using perl
This is the base class for the Bio::Phylo package. All other modules
inherit from it, the methods defined here are applicable to all. Consult
the manual for usage examples: Bio::Phylo::Manual.
http://search.cpan.org/dist/Bio-Phylo/
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p5-Bio-Phylo history
v. 1.7
date: 2007/09/08 00:53:11; author: linimon; state: Exp; lines: +2 -8
Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.
Work done by: gabor
Sponsored by: Google Summer of Code 2007
Hat: portmgr
v. 1.6
date: 2007/06/19 20:15:58; author: aaron; state: Exp; lines: +26 -3
Bump to v0.16.
PR: 111719
Submitted by: araujo@bsdmail.org
v. 1.5
date: 2007/05/19 20:00:24; author: flz; state: Exp; lines: +1 -0
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
v. 1.4
date: 2006/12/27 18:58:26; author: aaron; state: Exp; lines: +5 -4
Update to v0.15
v. 1.3
date: 2006/12/07 15:43:27; author: laszlof; state: Exp; lines: +11 -15
- Update to 0.14
Submitted by: Jin-Shan Tseng
Approved by: maintainer timeout (3 months)
v. 1.2
date: 2006/05/19 23:18:32; author: aaron; state: Exp; lines: +13 -6
- Updated from 0.07 to 0.12
Approved by: tobez (implicit)
0.08 20/Feb/2006 15:14
Improved referential integrity between nodes,
taxa, and data.
Implemented Fastnexus parser
Node object silently implements Bio::Tree::NodeI
interface if BioPerl is installed
Tree object silently implements Bio::Tree::TreeI
interface if BioPerl is installed
Added convertor methods for XML and CIPRES
Implemented more Matrix methods
Implemented symbol tables in Bio::Phylo::Util::CONSTANT
Implemented visit method for listable objects
Implemented caching infrastructure for calculations
Changed object-model to inside-out arrays
Added Biodiversity measures code by Aki Mimoto
Moved constants and exceptions to Bio::Phylo::Util::*
Fixed memory leak due to circular references
v. 1.1
date: 2006/05/13 16:48:15; author: aaron; state: Exp;
Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl.
Approved by: tobez (implicit)
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