The FreeBSD Ports Archive

FreeBSD biology : dna-qc

A quality control algorithm for DNA sequencing projects

 "relevant reference:
White, O., T. Dunning, G. Sutton, M. Adams, J. C. Venter, and C.
Fields (1993). A quality control algorithm for DNA sequencing
projects.  Nucleic Acids Research (in press)."
- from the README file

--
Tony Maher 
 

dna-qc history

v. 1.9
date: 2007/04/16 11:58:10;  author: edwin;  state: Exp;  lines: +1 -1
Remove always-true condition due to OSVERSION

v. 1.8
date: 2006/12/26 12:46:33;  author: linimon;  state: Exp;  lines: +1 -1
Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response
to email.

Hat:		portmgr

v. 1.7
date: 2006/05/03 23:26:32;  author: edwin;  state: Exp;  lines: +0 -1
Remove USE_REINPLACE from all categories starting with B

v. 1.6
date: 2006/01/09 03:25:02;  author: edwin;  state: Exp;  lines: +1 -1
Fix maintainer address

    From: Tony Maher 
    To: Edwin Groothuis 
    Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer addressupdate

    Actually I need  modify all my ports to use OptusNet rather than
    Biolateral.  Is there an easy way to do this or should I submit a
    separate 1-line patch and PR for each port?

    biology/crimap
    biology/dna-qc
    biology/flip
    biology/primer3
    biology/seqio
    biology/wise
    math/xgobi
    net/generic-nqs

Submitted by:	Tony Maher 

v. 1.5
date: 2004/02/23 03:54:36;  author: kris;  state: Exp;  lines: +7 -1
BROKEN on alpha 5.x: does not compile

v. 1.4
date: 2003/09/24 09:37:06;  author: osa;  state: Exp;  lines: +1 -1
Make portlint(1) happy by changing strip to ${STRIP_CMD}

Submitted by:	Oleg Karachevtsev 
PR:		56998

v. 1.3
date: 2003/02/21 11:01:32;  author: knu;  state: Exp;  lines: +1 -0
De-pkg-comment.

v. 1.2
date: 2002/11/04 05:46:25;  author: edwin;  state: Exp;  lines: +5 -4
PERL -> REINPLACE
And some ports have USE_PERL5=yes now.

v. 1.1
date: 2001/12/19 03:20:47;  author: petef;  state: Exp;
Add dna-qc 1993.07.26, a quality control algorithm for DNA
sequencing projects.

PR:		32998
Submitted by:	Tony Maher 
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