The FreeBSD Ports Archive

FreeBSD biology : distribfold

distributedfolding.org distributed protein folding project

 [ excerpt from developer's site ]

This is the distributedfolding.org's client. 

It makes protein structures to help sample the enormous size of
protein conformatoinal space. We hope to find a few good samples
and understand how a large computation can help crack the problem
of predicting protein structure - the protein folding problem.

Proteins have a vast number of folds, larger than we could hope to
compute even with distributed computing. Usually only one fold is
found in nature. The Distributed Folding Project aims to test our
new protein folding algorithm. We want see if it can reproduce
natural protein folds after making extremely large samples of many
different folds.

With your help, we will create the largest samples of protein folds
ever computed. First we will make 1 Billion (1,000,000,000) folds
for 5 small proteins, then we will try 10 Billion (10,000,000,000)
for another 10 large proteins. By the end of our first phase, we
hope to make over 100 Billion protein folds spanning 15 different
proteins. 

distribfold history

v. 1.15
date: 2007/04/16 11:57:17;  author: edwin;  state: Exp;  lines: +9 -13
- Remove unreachable OSVERSION code.
- Make portlint happier

v. 1.14
date: 2006/06/11 15:28:59;  author: erwin;  state: Exp;  lines: +0 -1
USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more than
2 years ago. Clean out the last traces of it.

With hat:	portmgr

v. 1.13
date: 2006/05/03 23:26:32;  author: edwin;  state: Exp;  lines: +0 -1
Remove USE_REINPLACE from all categories starting with B

v. 1.12
date: 2006/04/01 12:34:24;  author: edwin;  state: Exp;  lines: +2 -0
Use SUB_FILES for pkg-message

v. 1.11
date: 2004/06/24 14:24:40;  author: lioux;  state: Exp;  lines: +1 -1
Drop maintainership

v. 1.10
date: 2004/06/13 15:40:24;  author: lioux;  state: Exp;  lines: +1 -1
Update to 20040613 release

v. 1.9
date: 2004/02/27 00:01:02;  author: lioux;  state: Exp;  lines: +2 -1
Update to 20040226 release

v. 1.8
date: 2004/02/08 01:13:48;  author: lioux;  state: Exp;  lines: +1 -0
USE_SIZEify

v. 1.7
date: 2003/04/25 18:01:46;  author: lioux;  state: Exp;  lines: +1 -1
Update to 20030425 snapshot

v. 1.6
date: 2003/02/28 01:46:50;  author: lioux;  state: Exp;  lines: +1 -1
Update to 20030227 snapshot

v. 1.5
date: 2003/02/23 19:58:15;  author: lioux;  state: Exp;  lines: +1 -0
De-pkg-comment

v. 1.4
date: 2002/12/19 01:17:07;  author: lioux;  state: Exp;  lines: +8 -3
o Update to 20021105 snapshot
o Depend on compat4x on OSVERSION >= 500000 since these are 4.5-RELEASE
  binaries
o House a copy under MASTER_SITE_LOCAL: the local copy will be
  versioned, developer has yet to be convinced of the advantages
  of distributing versioned files

Approved by:	portmgr (knu)

v. 1.3
date: 2002/10/21 10:59:11;  author: tom;  state: Exp;  lines: +2 -2
Update CATEGORIES as per ports/44331.

While I'm here, remove unnecessary whitespace spotted by portlint.

PR:		ports/44331
Submitted by:	Martin Klaffenboeck 

v. 1.2
date: 2002/10/19 18:19:50;  author: lioux;  state: Exp;  lines: +16 -3
o Update to snapshot 20021015
o Fix an issue with the startup scripts

v. 1.1
date: 2002/10/07 03:07:13;  author: lioux;  state: Exp;
o New port distribfold version 0.1: distribfold.org distributed protein
  folding project
o One can start multiple instances of this port. Just install it
  using WITH_NCPU
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