The FreeBSD Ports Archive

FreeBSD biology : clustalw

CLUSTAL W Multiple Sequence Alignment Program

                CLUSTAL W Multiple Sequence Alignment Program

Clustal W is a multiple alignment program for DNA or proteins.
Clustal W was written by Des Higgins (des@chah.ucc.ie), Julie Thompson
(julie@IGBMC.u-strasbg.fr), and Toby Gibson (Gibson@EMBL-Heidelberg.DE).
Version 2.0 has been completely rewritten in C++.

Original Paper:
    Thompson, J.D., D. G. Higgins and T. J. Gibson. 1994. CLUSTAL W:
improving the sensitivity of progressive multiple sequence alignment
through sequence weighting, positions-specific gap penalties and
weight matrix choice. Nucleic Acids Research 22: 4673-4680.
    
Tips:
    Higgins, D. G., J. D. Thompson, and T. J. Gibson. 1996. Using
CLUSTAL for multiple sequence alignments. Methods in Enzymology 266:
383-402. 

clustalw history

v. 1.9
date: 2007/12/15 18:47:00;  author: pav;  state: Exp;  lines: +5 -5
- Update to 2.0

PR:		ports/117713
Submitted by:	Motomichi Matsuzaki 

v. 1.8
date: 2007/03/11 03:20:27;  author: linimon;  state: Exp;  lines: +2 -2
Reset dbader@eece.unm.edu due to maintainer-timeout.  While here, fix fetch.

v. 1.7
date: 2003/02/15 18:43:14;  author: naddy;  state: Exp;  lines: +2 -2
Update to 1.83.

PR:		48264
Submitted by:	David A. Bader 

v. 1.6
date: 2002/03/27 14:01:57;  author: wjv;  state: Exp;  lines: +1 -1
- Add a new patch
- Bump $PORTREVISION

PR:		36206
Submitted by:	David A. Bader  (MAINTAINER)

v. 1.5
date: 2002/03/22 08:23:22;  author: wjv;  state: Exp;  lines: +1 -0
- Fix certain mistakes in FreeBSD patches
- Bump PORTREVISION
- Poroblem originally reported by Fernan Aguero  on
  FreeBSD-bio list

PR:		36169
Submitted by:	David A. Bader  (MAINTAINER)

v. 1.4
date: 2001/07/10 13:54:19;  author: sobomax;  state: Exp;  lines: +3 -3
${PREFIX}/share/${PORTNAME} --> ${DATADIR}

v. 1.3
date: 2001/07/03 08:10:28;  author: wjv;  state: Exp;  lines: +2 -3
Update to version 1.82

PR:		28609
Submitted by:	David A. Bader  (MAINTAINER)

v. 1.2
date: 2000/10/03 01:10:19;  author: jeh;  state: Exp;  lines: +8 -7
- Support CC/CFLAGS/PREFIX properly
- gets() -> fgets()
- Add WWW: line into pkg/DESCR

Also bumped PORTREVISION to 1

PR:		21572
Submitted by:	tkato@prontomail.ne.jp 
Reviewed by:	will
Approved by:	MAINTAINER (dbader@eece.unm.edu)

v. 1.1
date: 2000/07/10 03:17:36;  author: steve;  state: Exp;
Adding clustalw version 1.81.
A CLUSTAL W Multiple Sequence Alignment Program.

PR:		19746
Submitted by:	David A. Bader 
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