The FreeBSD Ports Archive

FreeBSD biology : biojava

Open-source java tools for processing biological data

 The BioJava Project is an open-source project dedicated to providing Java
tools for processing biological data. This will include objects for
manipulating sequences, file parsers, CORBA interoperability, access to
ACeDB, dynamic programming, and simple statistical routines. 

The BioJava library is useful for automating those daily and mundane
bioinformatics tasks. As the library matures, the BioJava libraries will
provide a foundation upon which both free software and commercial packages
can be developed. 

biojava history

v. 1.15
date: 2007/05/19 20:00:22;  author: flz;  state: Exp;  lines: +1 -0
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.

v. 1.14
date: 2007/04/30 06:27:37;  author: nemoliu;  state: Exp;  lines: +1 -1
Use my @FreeBSD.org address.

Approved by:	delphij (mentor)

v. 1.13
date: 2007/03/27 08:01:54;  author: miwi;  state: Exp;  lines: +9 -8
- Update to 1.5-beta2
- Pass maintainership to submitter

PR:             110621
Submitted by:   Nemo Liu

v. 1.12
date: 2007/02/11 01:23:27;  author: kris;  state: Exp;  lines: +2 -0
Schedule these broken ports for removal on 2007-04-10 if they are still
broken at that time and no fix has been submitted.

v. 1.11
date: 2007/02/05 00:08:52;  author: kris;  state: Exp;  lines: +2 -0
BROKEN: Does not build

v. 1.10
date: 2006/12/13 12:55:58;  author: linimon;  state: Exp;  lines: +1 -1
Reset whitekid@gmail.com after timeouts and no response to email.

Hat:		portmgr

v. 1.9
date: 2006/11/21 22:35:28;  author: thierry;  state: Exp;  lines: +44 -15
- Upgrade to the latest beta and unbreak;

- Add a regression-test target;

- Fix plist for WITHOUT_SAMPLES.

PR:		ports/104685
Approved by:	maintainer's time-out (1 month)

v. 1.8
date: 2006/09/02 16:50:54;  author: kris;  state: Exp;  lines: +2 -0
Schedule these broken ports for termination on 2006-12-01

v. 1.7
date: 2006/04/22 22:09:45;  author: kris;  state: Exp;  lines: +2 -0
BROKEN: Does not compile

v. 1.6
date: 2004/11/22 15:47:58;  author: vs;  state: Exp;  lines: +41 -28
- Update biology/biojava to 1.30
- Install javadoc and example files
- Assign maintainership to submitter

PR:		ports/73391
Submitted by:	Cheng-Dae Choe
Add. reviewing:	hq@

v. 1.5
date: 2003/11/02 02:48:04;  author: edwin;  state: Exp;  lines: +1 -1
ports with possibly unreachable MAINTAINERs
*** addresses that seem to be dead:

PR:		ports/58694
Submitted by:	Oliver Eikemeier 

v. 1.4
date: 2003/02/21 11:01:31;  author: knu;  state: Exp;  lines: +1 -0
De-pkg-comment.

v. 1.3
date: 2002/06/16 01:08:49;  author: glewis;  state: Exp;  lines: +4 -4
Unbreak this port:

. Fix dependencies to be in sync with the recent JDK ports renaming.
. Replace MASTER_SITES with a location that actually contains the
  source.
. Fix the packing list.

Note that there is a much newer version of this application available,
but that is beyond the scope of what I was trying to do (just fix the
JDK dependency), as is the last two items.

v. 1.2
date: 2001/07/08 18:15:31;  author: ijliao;  state: Exp;  lines: +2 -2
Add NOPORTDOCS support to pkg-plist

v. 1.1
date: 2000/10/10 11:14:03;  author: jeh;  state: Exp;
Initial import of biology/biojava

PR:		21678
Submitted by:	Brad Chapman 
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